R package

salphycon

salphycon is a front end for the phruta R package.

devtools::install_github("datadiversitylab/salphycon")
salphycon

About

salphycon is a front end for the phruta R package. It's meant to introduce the early steps of a phylogenetics pipeline (taxon and gene selection, sequence retrieval, curation, and alignment) in a classroom setting, while staying flexible enough for a quick real research workflow, before moving to heavier computational steps like tree inference.

Papers