Runs geographic state ASR (discrete: island; mainland?)

Usage

run_geo_asr(phy, PAM, model = "ER", ...)

phy: The phylogenetic tree associated with your data
PAM: A presence-absence matrix reflecting where each species of interest is located. The match_island_phylo function will create this PAM, but if the user would prefer to input a custom PAM, make sure that it has a column titled "locale" with the name of an island in each row, and each subsequent column is titled with a species name. Each species column should include either a 0 (absence) or a 1 (presence), signifying whether that species occurs on the island in a given row.
model: The transition model to use in phytools::make.simmap. See documentation for ape::ace for more information. Default: ER
...: Further arguments that may be passed to ape::ace

A list of island-specific ancestral state reconstructions